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Summary

Species involved currently
Human:  Homo sapiens, GRCh37 (hg19),   GRC
Mouse:  Mus musculus, C57BL/6J (NCBI Build 37),   NCBIMouse Genome Sequencing Consortium
Chicken:  Gallus gallus, Gallus_gallus-2.1,   NCBIBirdBase
Zebrafish:  Danio rerio, Zv9,   SangerNCBI
Frog:  Xenopus tropicalis, v4.2,   JGI
Amphioxus:  Branchiostoma floridae, Branchiostoma floridae v2.0,   JGI
Fruitfly:  Drosophila melanogaster, Release 5.30 (NCBI Build 9.4),   NCBIFlyBase
Beetle:  Tribolium castaneum, Tribolium castaneum 3.0 Assembly (Tcas 3.0),   NCBIBCM
Honeybee:  Apis mellifera, Amel_4.5,   NCBIBCM
Nematode:  Caenorhabditis elegans, WS220,   WormBase

Genes Distribution in Classes
number in bracket indicates number of psudogenes or unassigned sequences.
ClassHumanMouseChickenZebrafishFrogAmphioxusFruitflyBeetleHoneybeeNematode
ANTP100 (19)100 (2)68 (12)129 (2) (1)112 (1)6047453930
PRD66 (32)86 (31)28 (1)51 (2)35 (2)2928252517
LIM121210 (2)201276887
POU16 (8)166 (2)191975644
HNF33362 (1)4   1
SINE66113633334
TALE20 (10)22 (1)11 (2)291698865
CUT7 (3)74 (2)9743336
PROS2223111111
ZF14 (1)1411171452212
CERS555 (1)321121 
Other4 (5)6 (11) (1)16 (2)11 (8)3 2215
Total255(78)279(45)149(23)315(2)(5)238(13)1331041059392

Update Logs
2011-08 HomeoDB2 released.
2011-07 Homoebox genes dataset updated for Fruitfly from genome assembly 5.0 to 5.30, Honeybee from 2.0 to 4.5, and Nematode from WS215 to WS220(HomeoDB v3.5.3).
2011-06 Homoebox genes dataset updated for Amphioxus from genome assembly v1.0 to v2.0, and Zebrafish from Zv8 to Zv9(HomeoDB v3.5.2).
2011-05 Frog homeobox genes dataset added (HomeoDB v3.5).
2011-02 Zebrafish homeobox genes dataset added (HomeoDB v3.4).
2011-01 Chicken homeobox genes dataset added (HomeoDB v3.3).
2011-01 Human homeobox genes updated based on GRCh37.p2 (HomeoDB v3.2).
2010-08 Homeobox genes of Nematode (Caenorhabditis elegans) added (HomeoDB v3.1).
2010-08 Functional updated, adding three functions and a summary page(HomeoDB v3.0): Download sequence, Compare homeobox genes between species, BLAST to HomeoDB to indentify and classify your sequence(s), and Summary page (this page) for a general knowledge of HomeoDB;
2010-06 Mouse homeobox genes dataset added (HomeoDB v2.0);
2009-12 Human homeobox genes dataset updated (HomeoDB v1.3), according to new assembly of human genome GRCh37;
2008-06 Amphioxus, Beetle and Honeybee homeobox genes dataset added (HomeoDB v1.2);
2008-05 HomeoDB v1.0 released;
2006 Initiated.